Brunner, C.A., J.M. Beall, S.J. Bentley, and Y. Furukawa. 2006. Hypoxia hotspots in the Mississippi Bight. Journal of Foraminiferal Research 36(2):95–107, https://doi.org/10.2113/36.2.95.
Buskey, E.J., H.K. White, and A.J. Esbaugh. 2016. Impact of oil spills on marine life in the Gulf of Mexico: Effects on plankton, nekton, and deep-sea benthos. Oceanography 29(3):174–181, https://doi.org/10.5670/oceanog.2016.81.
Cambazoglu, M.K., I.M. Soto, S.D. Howden, B. Dzwonkowski, P.J. Fitzpatrick, R.A. Arnone, G.A. Jacobs, and Y.H. Lau. 2017. Inflow of shelf waters into the Mississippi Sound and Mobile Bay estuaries in October 2015. Journal of Applied Remote Sensing 11(3):032410, https://doi.org/10.1117/1.JRS.11.032410.
Camilli, R., C.M. Reddy, D.R. Yoerger, B.A.S. Van Mooy, M.V. Jakuba, J.C. Kinsey, C.P. McIntyre, S.P. Sylva, and J.V. Maloney. 2010. Tracking hydrocarbon plume transport and biodegradation at Deepwater Horizon. Science 330:201–204, https://doi.org/10.1126/science.1195223.
Cowen, R.K., A.T. Greer, C.M. Guigand, J.A. Hare, D.E. Richardson, and H.J. Walsh. 2013. Evaluation of the In Situ Ichthyoplankton Imaging System (ISIIS): Comparison with the traditional (bongo net) sampler. Fishery Bulletin 111:1–12.
Cowen, R.K., and C.M. Guigand. 2008. In Situ Ichthyoplankton Imaging System (ISIIS): System design and preliminary results. Limnology and Oceanography: Methods 6:126–132, https://doi.org/10.4319/lom.2008.6.126.
Daly, K.L., U. Passow, J. Chanton, and D. Hollander. 2016. Assessing the impacts of oil-associated marine snow formation and sedimentation during and after the Deepwater Horizon oil spill. Anthropocene 13:18–33, https://doi.org/10.1016/j.ancene.2016.01.006.
De Pondeca, M.S.F.V., G.S. Manikin, G. DiMego, S.G. Benjamin, D.F. Parrish, R.J. Purser, W.-S. Wu, J.D. Horel, D.T. Myrick, Y. Lin, and others. 2011: The real-time mesoscale analysis at NOAA’s National Centers for Environmental Prediction: Current status and development. Weather Forecasting 26:593–612, https://doi.org/10.1175/WAF-D-10-05037.1.
Diercks, A., R.C. Highsmith, V.L. Asper, D. Joung, Z. Zhou, L. Guo, A.M. Shiller, S.B. Joye, A.P. Teske, N. Guinasso, T.L. Wade, and S.E. Lohrenz. 2010. Characterization of subsurface polycyclic aromatic hydrocarbons at the Deepwater Horizon site. Geophysical Research Letters 37, L20602, https://doi.org/10.1029/2010GL045046.
Dinnel, S.P., and W.J. Wiseman Jr. 1986. Fresh water on the Louisiana and Texas shelf. Continental Shelf Research 6:765–784, https://doi.org/10.1016/0278-4343(86)90036-1.
Druon, J., A. Mannino, S. Signorini, C. McClain, M. Friedrichs, J. Wilkin, and K. Fennel. 2010. Modeling the dynamics and export of dissolved organic matter in the Northeastern US Continental Shelf. Estuaries Coastal and Shelf Science 88:488–507, https://doi.org/10.1016/j.ecss.2010.05.010.
Dzwonkowski, B., A.T. Greer, C. Briseño-Avena, J.W. Krause, I.M. Soto, F.J. Hernandez, A.L. Deary, J.D. Wiggert, D. Joung, P.J. Fitzpatrick, and others. 2017. Estuarine influence on biogeochemical properties of the Alabama shelf during the fall season. Continental Shelf Research 140:96–109, https://doi.org/10.1016/j.csr.2017.05.001.
Dzwonkowski, B., K. Park, and R. Collini. 2015. The coupled estuarine-shelf response of a river-dominated system during the transition from low to high discharge. Journal of Geophysical Research 120:6,145–6,163, https://doi.org/10.1002/2015JC010714.
Fairall, C.W., E.F. Bradley, J.E. Hare, A.A. Grachev, and J.B. Edson. 2003. Bulk parameterization of air-sea fluxes: Updates and verification for the COARE algorithm. Journal of Climate 16:571–591, https://doi.org/10.1175/1520-0442(2003)016<0571:BPOASF>2.0.CO;2.
Federal Interagency Solutions Group. 2010. Oil Budget Calculator: Deepwater Horizon. Technical Documentation: A Report to the National Incident Command, 217 pp.
Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O’Reilly, and D. Haidvogel. 2006. Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget. Global Biogeochemical Cycles 20, GB3007, https://doi.org/10.1029/2005GB002456.
Fisher, C.R., A.W.J. Demopoulos, E.E. Cordes, I.B. Baums, H.K. White, and J.R. Bourque. 2014. Coral communities as indicators of ecosystem-level impacts of the Deepwater Horizon spill. Bioscience 64:796–807, https://doi.org/10.1093/biosci/biu129.
Gelfenbaum, G., and R.P. Stumpf. 1993. Observations of currents and density structure across a buoyant plume front. Estuaries 16(1):40–52, https://doi.org/10.2307/1352762.
Graham, W.M., R.H. Condon, R.H. Carmichael, I. D’Ambra, H.K. Patterson, L.J. Linn, and F.J. Hernandez Jr. 2010. Oil carbon entered the coastal planktonic food web during the Deepwater Horizon oil spill. Environmental Research Letters 5, 045301, https://doi.org/10.1088/1748-9326/5/4/045301.
Graham, B., W.K. Reilly, F. Beinecke, D.F. Boesch, T.D. Garcia, C.A. Murray, and F. Ulmer. 2011. Deep Water: The Gulf Oil Disaster and the Future of Offshore Drilling. Report to the President by the National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling, 398 pp.
Greer, A.T., R.K. Cowen, C.M. Guigand, and J.A. Hare. 2015. Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system. Journal of Marine Systems 142:111–125, https://doi.org/10.1016/j.jmarsys.2014.10.008.
Greer, A.T., and C.B. Woodson. 2016. Application of a predator-prey overlap metric to determine the impact of sub-grid scale feeding dynamics on ecosystem productivity. ICES Journal of Marine Science 73:1,051–1,061, https://doi.org/10.1093/icesjms/fsw001.
Grimes, C.B. 2001. Fishery production in the Mississippi River discharge. Fisheries 26:17–26, https://doi.org/10.1577/1548-8446(2001)026<0017:FPATMR>2.0.CO;2.
Haidvogel, D.B., H. Arango, W.P. Budgell, B.D. Cornuelle, E. Curchitser, E. Di Lorenzo, K. Fennel, W.R. Geyer, A.J. Hermann, L. Lanerolle, and others. 2008. Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the regional ocean modeling system. Journal of Computational Physics 227:3,595–3,624, https://doi.org/10.1016/j.jcp.2007.06.016.
Hazen, T.C., E.A. Dubinsky, T.Z. Desantis, G.L. Andersen, Y.M. Piceno, N. Singh, J.K. Jansson, A. Probst, S.E. Borglin, J.L. Fortney, and others. 2010. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 330:204–208, https://doi.org/10.1126/science.1195979.
Hofmann, E., J.N. Druon, K. Fennel, M. Friedrichs, D. Haidvogel, C. Lee, A. Mannino, C. McClain, R. Najjar, J. O’Reilly, and others. 2008. Eastern US continental shelf carbon budget integrating models, data assimilation, and analysis. Oceanography 21(1):86–104, https://doi.org/10.5670/oceanog.2008.70.
Ite, A.E., U.J. Ibok, M.U. Ite, and S.W. Petters. 2013. Petroleum exploration and production: Past and present environmental issues in the Nigeria’s Niger Delta. American Journal of Environmental Protection 1(4):78–90, https://doi.org/10.12691/env-1-4-2.
Joung, D., and A.M. Shiller. 2014. Dissolved barium behavior in Louisiana Shelf waters affected by the Mississippi/Atchafalaya River mixing zone. Geochimica et Cosmochimica Acta 141:303–313, https://doi.org/10.1016/j.gca.2014.06.021.
Joye, S.B., A. Bracco, T.M. Özgökmen, J.P. Chanton, M. Grosell, I.R. MacDonald, E.E. Cordes, J.P. Montoya, and U. Passow. 2016. The Gulf of Mexico ecosystem, six years after the Macondo Oil Well blowout. Deep Sea Research Part II 129:4–19, https://doi.org/10.1016/j.dsr2.2016.04.018.
Kourafalou, V.H., and Y.S. Androulidakis. 2013. Influence of Mississippi River induced circulation on the Deepwater Horizon oil spill transport. Journal of Geophysical Research 118(8):3,823–3,842, https://doi.org/10.1002/jgrc.20272.
Lohrenz, S., G. Fahnenstiel, D. Redalje, G.A. Lang, X.G. Chen, and M.J. Dagg. 1997. Variations in primary production of northern Gulf of Mexico continental shelf waters linked to nutrient inputs from the Mississippi River. Marine Ecology Progress Series 155:45–54, https://doi.org/10.3354/meps155045.
MacDonald, I.R., O. Garcia-Pineda, A. Beet, S. Daneshgar Asl, L. Feng, G. Graettinger, D. French-McCay, J. Holmes, C. Hu, F. Huffer, and others. 2015. Natural and unnatural oil slicks in the Gulf of Mexico. Journal of Geophysical Research 120:8,364–8,380, https://doi.org/10.1002/2015JC011062.
Michel, J., E.H. Owens, S. Zengel, A. Graham, Z. Nixon, T. Allard, W. Holton, P.D. Reimer, A. Lamarche, M. White, and others. 2013. Extent and degree of shoreline oiling: Deepwater Horizon oil spill, Gulf of Mexico, USA. PLoS ONE 8(6):e65087, https://doi.org//10.1371/journal.pone.0065087.
Moore, W.S. 2010. The effect of submarine groundwater discharge on the ocean. Annual Review of Marine Science 2:59–88, https://doi.org/10.1146/annurev-marine-120308-081019.
Moum, J.N., M.C. Gregg, R.C. Lien, and M.E. Carr. 1995: Comparison of turbulence kinetic energy dissipation rate estimates from two ocean microstructure profilers. Journal of Atmospheric and Oceanic Technology 12(2):346–366, https://doi.org/10.1175/1520-0426(1995)012<0346:COTKED>2.0.CO;2.
Moum, J.N., and J.D. Nash. 2009. Mixing measurements on an equatorial ocean mooring. Journal of Atmospheric and Oceanic Technology 26(2):317–336, https://doi.org/10.1175/2008JTECHO617.1.
Murawski, S.A., J.W. Fleeger, W.F. Patterson III, C. Hu, K. Daly, I. Romero, and G.A. Toro-Farmer. 2016. How did the Deepwater Horizon oil spill affect coastal and continental shelf ecosystems of the Gulf of Mexico? Oceanography 29(3):160–173, https://doi.org/10.5670/oceanog.2016.80.
Nixon, Z., S. Zengel, M. Baker, M. Steinhoff, G. Fricano, S. Rouhani, and J. Michel. 2016. Shoreline oiling from the Deepwater Horizon oil spill. Marine Pollution Bulletin 107:170–178, https://doi.org/10.1016/j.marpolbul.2016.04.003.
O’Connor, B.S., F.E. Muller-Karger, R.W. Nero, C. Hu, and E.B. Peebles. 2016. The role of Mississippi River discharge in offshore phytoplankton blooming in the northeastern Gulf of Mexico during August 2010. Remote Sensing of the Environment 173:133–144, https://doi.org/10.1016/j.rse.2015.11.004.
Oey, L.-Y., T. Ezer, and H.-C. Lee. 2005. Loop current, rings, and related circulation in the Gulf of Mexico: A review of numerical models and future challenges. Pp. 31–56 in Circulation in the Gulf of Mexico: Observations and Models. W. Sturges, and A. Lugo-Fernandez, eds, Geophysical Monograph Series 161, American Geophysical Union, Washington, DC, https://doi.org/10.1029/161GM04.
Ohlmann, J.C., P.P. Niiler, C.A. Fox, and R.R. Leben. 2001. Eddy energy and shelf interactions in the Gulf of Mexico. Journal of Geophysical Research 106:2,605–2,620, https://doi.org/10.1029/1999JC000162.
Özgökmen, T.M., E.P. Chassignet, C.N. Dawson, D. Dukhovskoy, G. Jacobs, J. Ledwell, O. Garcia-Pineda, I.R. MacDonald, S.L. Morey, M.J. Olascoaga, and others. 2016. Over what area did the oil and gas spread during the 2010 Deepwater Horizon oil spill? Oceanography 29(3):96–107, https://doi.org/10.5670/oceanog.2016.74.
Passow, U., and R.D. Hetland. 2016. What happened to all of the oil? Oceanography 29(3):88–95, https://doi.org/10.5670/oceanog.2016.73.
Passow, U., and K. Ziervogel. 2016. Marine snow sedimented oil released during the Deepwater Horizon spill. Oceanography 29(3):118–125, https://doi.org/10.5670/oceanog.2016.76.
Peterson, C.H., S.S. Anderson, G.N. Cherr, R.F. Ambrose, S. Anghera, S. Bay, M. Blum, R. Condon, T.A. Dean, W.M. Graham, and others. 2012. A tale of two spills: Novel science and policy implications of an emerging new oil spill model. Bioscience 62:461–469, https://doi.org/10.1525/bio.2012.62.5.7.
Peterson, R.N., W.S. Moore, S.L. Chappel, R.F. Viso, S.M. Libes, and L.E. Peterson. 2016. A new perspective on coastal hypoxia: The role of saline groundwater. Marine Chemistry 179:1–11, https://doi.org/10.1016/j.marchem.2015.12.005.
Reddy, C.M., J.S. Arey, J.S. Seewald, S.P. Sylva, K.L. Lemkau, R.K. Nelson, C.A. Carmichael, C.P. McIntyre, J. Fenwick, G.T. Ventura, and B.A. Van Mooy. 2012. Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill. Proceedings of the National Academy of Sciences of the United States of America 109(50):20,229–20,234, https://doi.org/10.1073/pnas.1101242108.
Schrope, M. 2011. Oil spill: Deep wounds. Nature 472:152–154, https://doi.org/10.1038/472152a.
Shchepetkin, A.F., and J.C. McWilliams. 2005. The regional oceanic modeling system (ROMS): A split-explicit, free-surface, topography-following-coordinate oceanic model. Ocean Modelling 9:347–404, https://doi.org/10.1016/j.ocemod.2004.08.002.
Shroyer, E.L., D.L. Rudnick, J.T. Farrar, B. Lim, S.K. Venayagamoorthy, L.C. St. Laurent, A. Garanaik, and J.N. Moum. 2016. Modification of upper-ocean temperature structure by subsurface mixing in the presence of strong salinity stratification. Oceanography 29(2):62–71, https://doi.org/10.5670/oceanog.2016.39.
Sikora, W.B., and B. Kjerfve. 1985. Factors influencing the salinity regime of Lake Pontchartrain, Louisiana, a shallow coastal lagoon: Analysis of a long-term data set. Estuaries 8:170–180, https://doi.org/10.2307/1351866.
Smyth, W.D., and J.N. Moum. 2012. Ocean mixing by Kelvin-Helmholtz instability. Oceanography 25(2):140–149, https://doi.org/10.5670/oceanog.2012.49.
Sturges, W., and R. Leben. 2000. Frequency of ring separations from the Loop Current in the Gulf of Mexico: A revised estimate. Journal of Physical Oceanography 30:1,814–1,819, https://doi.org/10.1175/1520-0485(2000)030<1814:forsft>2.0.co;2.
Valentine, D.L., G.B. Fisher, S.C. Bagby, R.K. Nelson, C.M. Reddy, S.P. Sylva, and M.A. Woo. 2014. Fallout plume of submerged oil from Deepwater Horizon. Proceedings of the National Academy of Sciences of the United States of America 111(45):15,906–15,911, https://doi.org/10.1073/pnas.1414873111.
Warner, J.C., B. Armstrong, R.Y. He, and J.B. Zambon. 2010. Development of a Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) modeling system. Ocean Modelling 35(3):230–244, https://doi.org/10.1016/j.ocemod.2010.07.010.
Wiggert, J.D., R.R. Hood, and C.W. Brown. 2017. Modeling hypoxia and its ecological consequences in Chesapeake Bay. Pp. 119–147 in Modeling Coastal Hypoxia: Numerical Simulations of Patterns, Controls and Effects of Dissolved Oxygen Dynamics. D. Justic, R.D. Hetland, K.A. Rose, and K. Fennel, eds, Springer.