Biogeochemical processes at hydrothermal vents : Microbes and minerals , bioenergetics , and carbon fluxes

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nourishment for vent fauna.

VeNt haBitatS
It is important to understand the environmental context in which deepsea hydrothermal vents are found in fast-and intermediate-spreading mid-ocean ridges.In these regions, the oceanic lithosphere is composed of the extrusive layer (0.5-1 km thick), the sheeted dike layer (1-2 km thick), and the gabbro layer (3-4 km thick) (Figure 1).The permeability of the extrusive layer (10 -15 to 10 -11 m 2 ) is much higher than those of the sheeted dike and gabbro layers (10 -17 to 10 -15 m 2 ) (Fisher et al., 2008), with higher permeabilities occurring in young oceanic crust (e.g., 10 -13.4 to 10 -9.4 m 2 and ~ 10 -13 to 10 -12 m 2 for the extrusive and sheeted dike layers, respectively, at the 9°50'N East Pacific Rise vent site; Stroup et al., 2009;Crone et al., 2011).At fastspreading mid-ocean ridges, where new oceanic crust is formed along tectonic plate boundaries at the quickest pace in the ocean, the gabbro layer is partially molten and a thin lens of molten magma ) to the rock, gain others (H 2 , CO 2 , CH 4 , S 2-, SiO 2 , reduced metals), and increase in temperature.Some of this fluid exits the seafloor within the axial valley along the spreading center, while the remainder circulates laterally within the oceanic crust, primarily within the extrusive layer, in rock as old as 65 million years where the formation of alteration minerals eventually minimizes rock permeability (Stein and Stein, 1994).
Ridge-crest hydrothermal flow contributes ~ 10% of all hydrothermal fluid mass but nearly half of the total hydrothermal heat flux (German and Von Damm, 2004).Hydrothermal circulation also forms at discrete points on the oceanic crust in association with submarine volcanoes found over magmatic hot spots along mid-ocean spreading centers, plate boundary subduction zones, and in the center of tectonic plates (Figure 1).
The amount of microbial biomass below the seafloor could potentially be quite high.It was estimated that there is 0.7 Pg (Pg = 10 15 g) and 1.3 Pg of carbon in microbial biomass in the open ocean above and below 200 m depth, respectively (Figure 1; Whitman et al., 1998).In contrast, the estimated amount of bacterial and archaeal carbon in marine sediments is significantly higher (56-90 Pg; Parkes et al., 1994;Lipp et al., 2008).Sediment covers most of the seafloor, but its thickness in the open ocean ranges from virtually no sediment cover near mid-ocean spreading centers to up to 200 m over the abyssal plains and in excess of 1 km near continental margins where particle input and crustal age increase.Therefore, most of this sedimentary biomass is confined to the continental margins due to the thicker and more organic-rich sediments.The extent of the microbial biosphere in oceanic crust and its biomass is poorly constrained, but it was estimated by calculating the volume of crust occupied by life using the 120°C isotherm as an upper temperature boundary (Heberling et al., 2010).Using this assumption, it was estimated that there is 200 Pg of bacterial and archaeal carbon in the oceanic lithosphere, and that 90% of this carbon is in the extrusive layer (Figure 1).This  (Table 1).The reaction is inhibited by silica and is thus less common in mafic and felsic rocks (felsic rocks are > 65% silica by weight).However, H 2 , CH 4 , and S 2-concentrations in mafic hydrothermal fluids increase significantly following a volcanic eruption, as circulating fluids interact with a newly injected shallow dike (e.g., Main Endeavour Field, 9°N East Pacific Rise in Table 1; Lilley et al., 2003;Seewald et al., 2003;Von Damm James F. Holden (jholden@microbio.umass.edu)and Lilley, 2004).
The differences in the fluid chemistry in these three rock types ultimately influence the kinds of microbial activity and biogeochemical processes that occur.

micrOBe-miNer al iNter actiONS
Many  Throughout most of the history of deep-sea hydrothermal vent research, combined sampling for microbiology and geochemistry has been difficult or impossible.Over the past decade, this limitation has changed with the advent of new biogeochemical sampling devices.hydrothermal vents and plumes are accessed by using humanoccupied vehicles, remotely operated vehicles (rOVs), autonomous underwater vehicles (auVs), hybrid rOV/auVs, conductivity, temperature, depth sensor/rosette hydrocasts, and moorings, all of which can be fitted with sampling devices and instruments for biogeochemistry research.here, we provide a few example technologies (Box Figure 1).The hydrothermal Fluid and particle Sampler (hFpS; Butterfield et al., 2004) and the autonomous microbial Sampler (amS; taylor et al., 2006) draw high-and low-temperature vent fluids as they exit the seafloor, measure fluid temperature, and collect up to 29 separate fluid and particle samples for chemical, mineral, and microbial analyses.Other specialized sampling systems include the Suspended particle rosette (Supr; Box Figure 1a) multisampler that is used to collect geochemical and microbial samples from hydrothermal plumes on a mooring or during a hydrocast where larger water volumes are necessary.to accomplish this sampling, Supr is equipped with a valve designed to allow higher filtering flow rates in order to rapidly filter 24 discrete large-volume samples (e.g., 30-100 l; Breier et al., 2009).The Bacterial mat Sampler under development by author Breier and david emerson of the Bigelow laboratory for Ocean Sciences is an automated, 140 ml syringe-style multisampler designed for a variety of seafloor sampling tasks in conjunction with synoptic geochemical sensing.Ocean water column and hydrothermal fluxes are also measured as functions of time using sediment traps (Box Figure 1B,c) attached to seafloor moorings (see toner et al., 2012, in this issue).Sediment traps allow for long-term sampling (months to years) and are currently the best option for integrated, vent-fieldscale assessment of biogeochemical fluxes (Khripounoff et al., 2008;german et al., 2010).
New instruments are also being developed to obtain geochemical and genomic data in situ.These instruments include solid state voltammetric (micro)electrodes for O 2 , h 2 S, Fe 2+ , mn 2+ , and soluble molecular FeS, such as the in Situ electrochemical analyzer system (Box Figure 1d;luther et al., 2008); mass spectrometers for h 2 , ch 4 , and cO 2 analyses (Box Figure 1e;camilli and duryea, 2009;Wankel et al., 2011); and laser raman spectroscopy for suspended mineral phase speciation (Breier et al., 2010). in situ genomic sampling instruments include the environmental Sample processor, which is capable of in situ, real-time polymerase chain reaction (preston et al., 2011), sample preservation (Ottesen et al., 2011), and sandwich hybridization assay and fluorescent in situ hybridization (Box Figure 1F; Scholin et al., 2009).all of these instruments are used as stand-alone units or in conjunction with the existing fluid and particle sampling devices described above.The high influx of seawater into sulfide chimneys at Endeavour Segment, coupled with mildly reducing conditions, leads to widespread oxidation of iron sulfide minerals and iron oxide formation within chimneys at this site (Kristall et al., 2006), where these organisms have been isolated (Kashefi and Lovley, 2003;Ver Eecke et al., 2009).

cold, Oxidizing environments: Bacterial mats, inactive Sulfides, and plumes
The cool outer surfaces of active sulfide chimneys and the interior of inactive chimneys each provide reduced compounds for (micro)aerobic chemolithoautotrophic metabolisms.However, the diversity of the microbial communities present in cold sulfides decreases with age, with few to no archaea detected as the reactivity of the sulfide component decreases and oxidized metal-bearing minerals accumulate (Rogers et al., 2003;Edwards et al., 2003).There is heavy accumulation of secondary Fe oxides as a result of mineral dissolution and the activity of neutrophilic iron oxidizing bacteria (Edwards et al., 2003).
Iron-encrusted bacterial biofilms form preferentially on the sulfide mineral pyrrhotite [Fe 1-x S; x = 0-0.2],and microbially produced Fe-complexing ligands may play critical roles in the delivery of Fe(II) to their cells as filamentous stalk structures accumulate iron oxyhydroxide minerals within the biofilm (Toner et al., 2009b).Biofilms occur above pits and inside pores of the sulfide mineral assemblages, and they are densely populated with particles of twisted stalk morphologies of iron-oxidizing bacteria.
The obligately iron-oxidizing microaerophile Mariprofundus ferrooxydans (Figure 2C) was isolated from an ironoxidizing mat from Loihi Seamount off Hawaii's Big Island and produced twisted filamentous stalk structures coated with iron oxyhydroxides like those reported above (Emerson et al., 2007).Time-lapse microscopy showed that M. ferrooxydans stalk formation begins with attachment to a solid surface followed by further stalk excretion as the cells grow and rotate away from the holdfast (Chan et al., 2011) (Sievert et al., 2007).These sulfur flocs can be seen as "snowblower" diffuse vents immediately following a volcanic eruption (Haymon et al., 1993).
Hydrothermal vent fluids mix turbulently with seawater to produce a water-column plume in which a variety of abiotic and biotic pathways for oxidation-reduction and particleforming reactions are favorable.Mineral particles form rapidly and abiotically, but there is a growing body of evidence that suggests that microorganisms are also actively forming mineral particles within these plumes and play roles that may have been overlooked previously.Microbial biomass, biomolecules (transparent exopolymers and lipids), and mineral aggregates coated with an organic matrix are concentrated within hydrothermal plumes relative to the surrounding seawater, indicating that the plume is supporting their production (Cowen et al., 2001;Wakeham et al., 2001;Shackelford and Cowen, 2006;Bennett et al., 2008;Toner et al., 2009a).Concentrations of transparent exopolymer particles increased in the plume with plume age implying that the source is in situ production rather than the original hydrothermal effluent (Shackelford and Cowen, 2006).Organic carbon from biological activity can affect elemental cycles indirectly.For example, Fe(II) and Fe(III) complexes with dissolved and particulate organic carbon in plumes change the mobility of vent iron in the deep sea (Bennett et al., 2008;Toner et al., 2009a).Furthermore, direct activity of Mn-oxidizing microorganisms has been demonstrated for Guaymas Basin plumes (Dick and Tebo, 2010), and evidence for CH 4 and NH 4 + oxidation in plumes also exists (De Angelis et al., 1993;Lam et al., 2008).Although work is underway to gain a better understanding of biogeochemical processes within plumes, it is evident that microbemineral interactions in the plumes make a significant contribution to metal cycling in the deep ocean.

BiOeNergeticS: geOchemical Supply aNd OrgaNiSmal demaNd
The large scale and poor accessibility of deep-sea hydrothermal systems necessitates the use of models to predict vent biogeochemical processes.Bioenergetic models are currently the best tool available for these predictions.Chemical disequilibria are widespread at deep-sea vents, and many of the abiotic processes that drive the system back toward equilibrium proceed slowly.Microbes accelerate these reactions and capture the energy released for their growth.
Energy yields can be quantified using chemical parameters, such as Gibbs energy (ΔG r,T,P ), which incorporates both the properties of the reaction constituents under hydrothermal conditions and the specific system composition.As described above, deep-sea hydrothermal fluid geochemistry can vary significantly (Table 1), and these variations lead to modeling (Shock and Schulte, 1998), and subsequent fluid analyses confirmed the presence of organic compounds in hydrothermal systems (Seewald et al., 2003;Cruse and Seewald, 2006;Lang et al., 2010).Laboratory experiments where hydrothermal conditions are replicated are used to confirm and refine geochemical models (Foustoukos et al., 2011)." synthesis, and the variations in metabolic niches as a function of time and space (McCollom and Shock, 1997;McCollom, 2000;McCollom and Amend, 2005;Houghton and Seyfried, 2010;Amend et al., 2011) (Smith and Shock, 2008), the minimum energy requirements for growth under adverse conditions are controversial (Schink, 1997;Jackson and McInerney, 2002).Finally, it has been suggested that while Gibbs energy availability might determine large-scale microbial diversity, it is rate of energy delivery (i.e., power), as determined by the rate of substrate delivery by fluid flow and diffusion, that might exert finer control on microbial metabolic diversity (Hoehler, 2004).

Future OutlOOK life at hydrothermal Vents and Biogeochemistry
Hydrothermal venting is distributed globally along the 67,000 km long midocean ridge system and contributes large amounts of bioactive elements, such as iron, to the ocean from over 300 known sites (Elderfield and Schultz, 1996;Baker and German, 2004) (Toner et al., 2009a).We do not yet know how vent primary productivity affects ocean carbon biogeochemistry.
However, there is evidence that localized carbon production at vents affects the biogeochemistry of other hydrothermally derived elements.
In hydrothermal plumes, evidence suggests that both dissolved and particulate organic carbon may stabilize vent-derived metals against precipitation as poorly soluble minerals (Sander et al., 2007;Bennett et al., 2008;Toner et al., 2009a;Sander and Koschinsky, 2011).Complexes with organic ligands have been observed to stabilize approximately 4% of iron as dissolved Fe(III) in nonbuoyant plumes near 5°S Mid-Atlantic Ridge (Bennett et al., 2008).Particulate organic carbon enriched in Fe(II) was observed in sinking hydrothermal plume material at 9°50'N East Pacific Rise (Toner et al., 2009a).Particulate organic carbon was also enriched in rising and nonbuoyant plume suspended material at the same location (Bennett et al., 2011).The Fe (Bennett et al., 2008), and buffer the ocean Fe cycle over thousandyear timescales against shorter-term processes such as aerosol deposition (Tagliabue et al., 2010).

life on early earth and astrobiology
In addition to recent advances in spacecraft exploration of extraterrestrial environments, studying hydrothermal vents on Earth offers a unique opportunity to explore how life might persist elsewhere in the solar system.Hydrothermal vents would have provided a reliable source of chemosynthetic energy and some refuge from the intense surface environment of the early Earth (Jakosky and Shock, 1998), and some suggest that the chemical energy in vents may have provided the fuel needed to initiate the onset of life (Baross and Hoffman, 1985).
Isotopically light carbon (Schidlowski, 1993) and putative microfossils (Schopf, 1993;Wacey et al., 2011) suggest that life on Earth was well established by 3.4-3.8 billion years ago.Indeed, many extant chemolithoautotrophic thermophiles that inhabit vents are closely related phylogenetically to the last common ancestor of all life (Woese, 1987).Similar conditions may exist (or once have existed) on other extraterrestrial bodies, including Mars and the Jupiter moon Europa.There is evidence for liquid water (or brine) in modern and ancient Martian environments (Carr, 1996;McEwen et al., 2011), and volcanic activity could have supported hydrothermal systems similar to those on Earth.The geochemistry of Martian vents would be similar to hydrothermal environments on Earth and estimates of the bioenergetic potential of these environments suggest that chemolithoautotrophic life could have been viable on Mars (Jakosky and Shock, 1998;Varnes et al., 2003).Recent reports of CH 4 in the Mars atmosphere (Mumma et al., 2009) may reflect ongoing geochemical or biological processes in the subsurface.
On Europa, it is thought that the ice shell at the surface is underlain by a ~ 100 km deep ocean that covers a silicate rock mantle (Chyba and Phillips, 2007).Tidal heating caused by the gravitational pull of Jupiter and two of its other moons, Io and Ganymede, could generate hydrothermal vents in the depths of Europa's oceans.Geochemical models suggest that sulfate reduction and methanogenesis are favorable metabolisms in these extraterrestrial environments (McCollom, 1999;Zolotov and Shock, 2003).
In conclusion, it is well documented that the rocks and gases underlying hydrothermal vents will determine the reFereNceS this issue); and (8) sequencing of dozens of bacterial, archaeal, and viral genomes and metagenomes.As a result, we are now poised to address the next generation of questions related to hydrothermal vent biogeochemical processes.What are the geochemical, mineralogical, and physical constraints on hydrothermal microbial life within, on, and above the seafloor?How does the production of new biomass in the vents compare with the rest of the ocean, and what is its impact on global biogeochemical processes?What record of life is left behind in vent environments, and how can we use this record to search for evidence of life on the early Earth and beyond our own planet?

iNtrOductiON
Hydrothermal vents are unique among Earth's habitats as points of contact between the deep sea and the upper mantle.At these locations, seawater percolates through cracks and fissures in the oceanic crust until it reaches rock heated by shallow pockets of magma.The seawater is heated and chemically transformed through interactions with rocks and volcanic gases, and is converted into hydrothermal fluid.These hot, buoyant fluids then course their way rapidly back up to and through the seafloor, sometimes as black jets of superheated fluid billowing into the deep sea, and other times as diluted shimmering water rising from cracks in the seafloor.Perhaps most interestingly of all, this interface between hot hydrothermal fluid from the crust and cold seawater supports microbial life that is independent of organic material derived from photosynthesis and consequently is largely disconnected from the surface photosynthetic biosphere.This microbial life alters the chemistry of hydrothermal vent habitats and provides aBStr act.Hydrothermal vents are among the most biologically active regions of the deep ocean.However, our understanding of the limits of life in this extreme environment, the extent of biogeochemical transformation that occurs in the crust and overlying ocean, and the impact of vent life on regional and global ocean chemistry is in its infancy.Recently, scientific studies have expanded our view of how vent microbes gain metabolic energy at vents through their use of dissolved chemicals and minerals contained in ocean basalts, seafloor sulfide deposits, and hydrothermal plumes and, in turn, how they catalyze chemical and mineral transformations.The scale of vent environments and the difficulties inherent in the study of life above, on, and below the deep seafloor have led to the development of geochemical and bioenergetic models.These models predict habitability and biological activity based on the chemical composition of hydrothermal fluids, seawater, and the surrounding rock, balanced by the physiological energy demand of cells.This modeling, coupled with field sampling for ground truth and discovery, has led to a better understanding of how hydrothermal vents affect the ocean and global geochemical cycles, and how they influence our views of life on the early Earth and the search for life beyond our own planet.forms at or near the sheeted dike layer boundary.Seawater percolates downward until it reaches hot fractured rock above the magma lens (Figure 1) where water-rock reactions cause the fluid to lose some chemical species (O 2 , Mg 2+ , potentially large biomass of subseafloor microbes suggests that these organisms could significantly affect biogeochemical fluxes and carbon cycles in the deep ocean.The relatively large amount of geochemical energy available in hydrothermal fluids suggests that subseafloor and deep-sea biomass found in these fluids will be among the largest and most metabolically active.Yet, there has not been an estimate of microbial biomass associated directly with hydrothermal processes above or within the seafloor.Deep-sea hydrothermal vents provide one of the best access points to the rocky subseafloor and hydrothermal plumes, and thus are an ideal starting point for understanding biogeochemical processes throughout the oceanic igneous crust and in the deep sea.Some hydrothermal fluids rise through the crust undiluted and exit the seafloor at temperatures up to 350-400°C (Figure 2).Upon contact with seawater, the dissolved metals and sulfides in the hydrothermal fluids precipitate, forming the billowing black jets and hydrothermal plumes typically associated with these environments.Cold seawater that is in direct contact with hot hydrothermal fluid is rapidly

Figure 1 .
Figure 1.cross section of the upper oceanic crust created at a fast-spreading mid-ocean ridge.Blue and red arrows show cold seawater and hot hydrothermal fluid circulation, respectively.The yellow double arrows indicate cO 2 exchange among the atmosphere, the deep ocean, and the subsurface.The numbers indicate the estimated amount of bacterial and archaeal carbon in pg (10 15 g) in different regions of the ocean and the rock age where hydrothermal fluid circulation in the crust ceases (65 million years).dic = dissolved inorganic carbon.pOc = particulate organic carbon.
is Associate Professor, Department of Microbiology, University of Massachusetts, Amherst, MA, USA.John A. Breier is Assistant Scientist, Applied Ocean Physics and Engineering Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.Karyn L. Rogers is Research Scientist, Geophysical Laboratory, Carnegie Institution of Washington, Washington, DC, USA.Mitchell D. Schulte is Mars Exploration Program Scientist, Planetary Science Division, National Aeronautics and Space Administration Headquarters, Washington, DC, USA.Brandy M. Toner is Assistant Professor, Department of Soil, Water and Climate, University of Minnesota, St. Paul, MN, USA.

Figure 2 .
Figure 2. cross section of (a) an active sulfide chimney, (B) hydrothermal plumes, and (c) diffuse fluid venting from basalt, with electron micrographs of microorganisms from each region.red arrows show hot hydrothermal fluid circulation within flow channels; blue arrows, cold seawater through basalt and chimney pores; and tan arrows, a mixture of these two fluids flowing from the seafloor.The remotely operated vehicle Jason 2 is shown approaching the vent site.The organisms in the electron micrographs are from (a) the hyperthermophilic iron reducer Hyperthermus sp.strain ro04 from an active sulfide chimney (0.5 μm scale bar; recent work of author holden), (B) scanning transmission X-ray micrograph of a nonbuoyant plume aggregate from 9°N east pacific rise (2 μm scale bar, recent work of author Breier and colleagues), and (c) the mesophilic iron oxidizer Mariprofundus ferrooxydans with its iron-oxidecoated stalk (0.5 μm scale bar).image c was reprinted by permission from macmillan publishers ltd: The ISME Journal, chan et al., copyright 2011.
biological activities at the seafloor and in deep-sea hydrothermal environments involve interactions between organisms and minerals.Microbial interactions with minerals can be active, involving direct mineral utilization for energy generation or a trace metal requirement (e.g., Fe, Ni, Co, Zn, Mo, W), or passive where mineral interaction plays a secondary role, such as particle attachment.Even cells that are "passively" attached to a mineral may still be utilizing the mineral to satisfy their trace element requirements.Mineral utilization requires unique physiological mechanisms because the reactants are insoluble.These mechanisms include direct protein contact with the minerals, secretion of chelators that solubilize and transfer mineral components (e.g., Fe) to the cell, and secretion of electron shuttles that transfer electrons between the cell and the insoluble metal (see review by Holden et al., 2011).These microbe-mineral interactions occur in the interiors and exteriors of active sulfide chimneys and diffuse vents, in cold extinct sulfide deposits and basalts, and in the plumes emitted from active hydrothermal systems.Understanding how vent microbes interact with minerals biochemically, the constraints on their mineral interactions, and the kinds of biologically mediated mineral transformations that occur are frontiers of future vent biogeochemical research.
BOX 1 | tOOlS OF VeNt BiOgeOchemiStry reSearch Box Figure 1.examples of sampling platforms, devices, and instruments used for hydrothermal vent biogeochemistry research.(a) Suspended particle rosette multisampler being prepared by Kaitlyn mccartney and chip Breier for remotely operated vehicle deployment on Jason 2. Photo by Tom Kleindinst.(B) a sediment trap.(c) a time series sample collection system being recovered from mooring deployments.Photo courtesy McLane Research Laboratories, Inc.(d) The in Situ electrochemical analyzer system being prepared by tommy moore for deployment by Jason 2. Photo by Mustafa Yücel.(e) The in situ mass spectrometer developed by peter girguis being used to quantify the distribution of hydrogen around mussels at vents along the mid-atlantic ridge.Photo by Nicole Dubilier.(F) The environmental Sample processor being prepared for deployment by chris Scholin.Photo © MBARI 2011In the interior of active sulfide chimneys, the pH of hydrothermal fluid that has been diluted with seawater to temperatures below 120°C (near the current upper temperature limit of life) is estimated to be < pH 3 to pH 7 depending on mixing styles and the chemical composition of the initial hydrothermal fluid(Tivey, 2004).Presumably, the pH range is similar in hot, basalt-hosted diffuse vent environments.Many of the thermophiles and hyperthermophiles (i.e., microbes that grow optimally above 50°C and 80°C) cultured from and detected in sulfide chimneys and diffuse vents are archaea and mild acidophiles to neutrophiles (i.e., optimal growth between pH 5 and 7; seeSievert and   Vetriani, 2012, in this issue).However, isolation of the thermoacidophilic archaeon Aciduliprofundum boonei from a Mariner Field sulfide chimney with highly acidic hydrothermal fluids(Reysenbach et al., 2006) shows that other pH classes of microorganisms are also found.Hydrogen concentrations in hydrothermal fluids also influence the types of autotrophs found in chimneys with hydrogenotrophic methanogens, most abundant at sites with higher H 2 concentrations (ultramafic and recent eruption sites).Other thermophilic H 2 oxidizers, such as iron reducers and microaerophiles, are more abundant than methanogens at sites with lower H 2 concentrations (mafic and dacitic/ andesitic sites;Takai and Nakamura, 2010;Ver Eecke et al., 2009;Flores et al., 2011).Hyperthermophilic iron reducers from sulfide chimneys oxidize H 2 and transform ferrihydrite [Fe 10 O 14 (OH) 2 ] to magnetite [Fe 3 O 4 ] and possibly other forms of magnetic iron(Ver Eecke et al., 2009) when in direct contact with the mineral through unknown energyconserving mechanisms (Figure2A).
. Stalk filaments are initially lightly mineralized with poorly crystalline iron oxyhydroxide, but with age they are more heavily coated with crystals of lepidocrocite [γ-FeOOH].A similar phenomenon occurs with the sulfideoxidizing microaerophile Arcobacter sulfidicus.It excretes elemental sulfur from one end of the cell as thin filaments, which are colonized by other members of the population who deposit sulfur along the circumference of the protofilament, forming large flocs of native sulfur differences in energy availability and biological diversity.The goal of bioenergetic modeling is to evaluate the energy yields for potential metabolic reactions while accounting for variations in host rock composition, fluid chemistry, and flow regime.These models must be used in conjunction with estimates of microbial energy requirements and observed microbial diversity in order to understand how vent geochemistry supports diverse ecosystems.Geochemical modeling has been used successfully to predict geochemical vent fluid characteristics that were later observed.Because many parts of hydrothermal systems are difficult to reach through current sampling methods, geochemical models, field observations, and laboratory experiments are used and advanced in parallel to further our understanding of vent biogeochemistry (e.g., water-rock reactions, fluid mixing, conductive cooling, coupled reactive transport).For example, the metastability of organic compounds under hydrothermal conditions was predicted from geochemical Although in situ fluid compositions are ideal for evaluating bioenergetics, they are difficult to obtain.Therefore, geochemical models are used to estimate fluid compositions at temperatures relevant to vent organisms and calculate the energy yields of potential metabolic reactions, the energetic costs of biomass " uNderStaNdiNg hOW VeNt micrOBeS iNteract With miNeralS BiOchemically, the cONStraiNtS ON their miNeral iNteractiONS, aNd the KiNdS OF BiOlOgically mediated miNeral traNSFOrmatiONS that Occur are FrONtierS OF Future VeNt BiOgeOchemical reSearch.
potential role for carbon as a transport vector for hydrothermal trace elements could require reconsideration of hydrothermal flux estimates.In the case of the Fe cycle, recent estimates indicate that hydrothermal plumes may supply up to 25% of all deep-ocean dissolved chemical and mineral composition of hydrothermal vent environments.This is important for setting the boundaries on the types of metabolisms present, which in turn dictates biogeochemistry and the types of microorganisms that are present.While significant advances have been made in understanding biogeochemical processes at vents, there remains much more to learn, especially in the areas of microbial interactions with minerals and dissolved chemicals present in vent systems, and how their activity ultimately affects the chemistry and biology of the deep sea.acKNOWledgemeNtS Special thanks to our reviewers for their constructive comments.Research for this paper was supported by the National Science Foundation (NSF) Division of Ocean Sciences grants 0732611 for JFH, 0926805 and 1038055 for JAB, and 1038055 for BMT; and by the University of Missouri Research Board for KLR.This article resulted from the Biogeochemical Processes working group at the 2010 R2K Community Meeting supported by NSF Ocean Sciences grant 0838923.